Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | FAP39_16525 | Not Available | + | 3383364 - 3384086 | 25793.2 |
| hypothetical protein | FAP39_16530 | Not Available | - | 3384325 - 3385671 | 48242.6 |
| sulfatase | FAP39_16535 | Not Available | + | 3386144 - 3387841 | 62749.5 |
| hypothetical protein | FAP39_16540 | Not Available | + | 3387887 - 3389017 | 41910.8 |
| hypothetical protein | FAP39_16545 | Not Available | + | 3389760 - 3390224 | 16682.9 |
| cu(i)-responsive transcriptional regulator | FAP39_16550 | Not Available | - | 3390375 - 3390758 | 14483.4 |
| copper-translocating p-type atpase | FAP39_16555 | Not Available | - | 3390778 - 3393285 | 86779.2 |
| heavy-metal-associated domain-containing protein | FAP39_16560 | Not Available | + | 3393434 - 3393634 | 7015.3 |
| duf411 domain-containing protein | FAP39_16565 | Not Available | - | 3393872 - 3394348 | 16797.2 |
| c-type cytochrome | FAP39_16570 | Not Available | - | 3394451 - 3394954 | 17950.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.