Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | FAP39_16465 | Not Available | - | 3371568 - 3372452 | 33386.1 |
| lysr family transcriptional regulator | FAP39_16470 | Not Available | - | 3372842 - 3373702 | 31768.0 |
| gamma-butyrobetaine dioxygenase | FAP39_16475 | Not Available | + | 3373819 - 3374949 | 42333.8 |
| hd domain-containing protein | FAP39_16480 | Not Available | + | 3374946 - 3375542 | 22279.4 |
| hypothetical protein | FAP39_16490 | Not Available | + | 3376733 - 3377014 | 10115.2 |
| mfs transporter | FAP39_16495 | Not Available | - | 3377295 - 3378656 | 48163.2 |
| hypothetical protein | FAP39_16500 | Not Available | + | 3378757 - 3379113 | 12813.8 |
| abc transporter permease | FAP39_16510 | Not Available | + | 3380794 - 3381732 | 33395.1 |
| abc transporter permease subunit | FAP39_16515 | Not Available | + | 3381788 - 3382609 | 28779.3 |
| abc transporter atp-binding protein | FAP39_16520 | Not Available | + | 3382576 - 3383370 | 27903.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.