Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_16345 | Not Available | + | 3347967 - 3348629 | 25165.9 |
| type i restriction-modification system subunit m | FAP39_16350 | Not Available | + | 3348793 - 3350340 | 57438.4 |
| restriction endonuclease subunit s | FAP39_16355 | Not Available | + | 3350337 - 3351548 | 45619.1 |
| type i restriction endonuclease subunit r | FAP39_16360 | Not Available | + | 3351599 - 3354697 | 118980.0 |
| giy-yig nuclease family protein | FAP39_16365 | Not Available | + | 3354791 - 3355729 | 34146.2 |
| hypothetical protein | FAP39_16370 | Not Available | - | 3355764 - 3356018 | 8952.8 |
| hypothetical protein | FAP39_16375 | Not Available | - | 3355927 - 3356184 | 9466.66 |
| duf882 domain-containing protein | FAP39_16380 | Not Available | - | 3356181 - 3356855 | 24567.4 |
| hypothetical protein | FAP39_16385 | Not Available | - | 3357048 - 3357278 | 8094.13 |
| vwa domain-containing protein | FAP39_16395 | Not Available | - | 3358226 - 3360855 | 94218.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.