Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family type i secretion periplasmic adaptor subunit | FAP39_16290 | Not Available | - | 3332986 - 3334356 | 50744.6 |
| atp-binding cassette domain-containing protein | FAP39_16295 | Not Available | - | 3334280 - 3336220 | 68170.1 |
| hypothetical protein | FAP39_16300 | Not Available | - | 3336217 - 3337746 | 54134.4 |
| tm0106 family recb-like putative nuclease | FAP39_16310 | Not Available | - | 3338723 - 3341968 | 119067.0 |
| hit domain-containing protein | FAP39_16315 | Not Available | + | 3342572 - 3343525 | 35545.6 |
| hypothetical protein | FAP39_16320 | Not Available | + | 3343527 - 3343982 | 16993.2 |
| hypothetical protein | FAP39_16325 | Not Available | + | 3344277 - 3345383 | 38057.7 |
| thermonuclease family protein | FAP39_16330 | Not Available | + | 3345456 - 3346148 | 25380.0 |
| hypothetical protein | FAP39_16335 | Not Available | + | 3346187 - 3346690 | 17595.2 |
| wyl domain-containing protein | FAP39_16340 | Not Available | + | 3346956 - 3347939 | 37080.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.