Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bifunctional sulfate adenylyltransferase/adenylylsulfate kinase | FAP39_16190 | Not Available | - | 3314640 - 3316352 | 64225.5 |
| thioredoxin-disulfide reductase | FAP39_16195 | Not Available | - | 3316568 - 3317512 | 33614.1 |
| lrp/asnc family transcriptional regulator | FAP39_16200 | Not Available | + | 3317722 - 3318222 | 18504.2 |
| hypothetical protein | FAP39_16205 | Not Available | - | 3318388 - 3318567 | 6585.11 |
| peptidoglycan editing factor pgef | FAP39_16210 | Not Available | - | 3318677 - 3319435 | 26804.8 |
| class i sam-dependent methyltransferase | FAP39_16215 | Not Available | - | 3319425 - 3320489 | 38315.7 |
| prolipoprotein diacylglyceryl transferase | FAP39_16220 | Not Available | - | 3320482 - 3321369 | 32411.2 |
| accessory factor ubik family protein | FAP39_16225 | Not Available | + | 3321466 - 3321705 | 8963.67 |
| abc transporter atp-binding protein | FAP39_16230 | Not Available | + | 3321845 - 3322549 | 24950.9 |
| abc transporter permease | FAP39_16235 | Not Available | + | 3322553 - 3324916 | 84657.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.