Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system protein gcvh | FAP39_01155 | Not Available | + | 250079 - 250438 | 13142.3 |
| aminomethyl-transferring glycine dehydrogenase | FAP39_01160 | Not Available | + | 250543 - 253389 | 103804.0 |
| ftsx-like permease family protein | FAP39_01165 | Not Available | - | 253511 - 256048 | 88247.5 |
| abc transporter atp-binding protein | FAP39_01170 | Not Available | - | 256045 - 256734 | 24549.4 |
| arylesterase | FAP39_01175 | Not Available | + | 256766 - 257416 | 22610.0 |
| cold-shock protein | FAP39_01180 | Not Available | - | 257499 - 257705 | 7213.46 |
| nad(p)-dependent oxidoreductase | FAP39_01185 | Not Available | + | 258008 - 259330 | 45693.1 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | FAP39_01190 | Not Available | + | 259346 - 260650 | 47091.0 |
| nadp-dependent isocitrate dehydrogenase | FAP39_01195 | Not Available | - | 260817 - 263030 | 77921.0 |
| phosphatidylcholine/phosphatidylserine synthase | FAP39_01200 | Not Available | - | 263250 - 264014 | 28371.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.