Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | FAP39_15985 | Not Available | + | 3280634 - 3281452 | 30008.2 |
| ferrochelatase | FAP39_15990 | Not Available | + | 3281508 - 3282563 | 39964.1 |
| l,d-transpeptidase | FAP39_15995 | Not Available | - | 3282983 - 3283579 | 22390.7 |
| cap domain-containing protein | FAP39_16000 | Not Available | + | 3283748 - 3284272 | 18766.0 |
| hypothetical protein | FAP39_16005 | Not Available | - | 3284263 - 3284757 | 18204.0 |
| class i sam-dependent rna methyltransferase | FAP39_16010 | Not Available | - | 3284846 - 3286060 | 43156.8 |
| glycosyltransferase | FAP39_16015 | Not Available | - | 3286102 - 3287616 | 57212.5 |
| hypothetical protein | FAP39_16020 | Not Available | - | 3287613 - 3287798 | 7051.43 |
| hypothetical protein | FAP39_16030 | Not Available | - | 3289106 - 3289396 | 10556.3 |
| flgb family protein | FAP39_16035 | Not Available | - | 3289414 - 3289800 | 13686.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.