Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | FAP39_15935 | Not Available | - | 3270865 - 3272409 | 56332.2 |
| abc transporter atp-binding protein | FAP39_15940 | Not Available | - | 3272485 - 3274131 | 60309.6 |
| abc transporter permease subunit | FAP39_15945 | Not Available | - | 3274145 - 3275338 | 42873.4 |
| abc transporter permease | FAP39_15950 | Not Available | - | 3275335 - 3276333 | 35641.6 |
| prolyl aminopeptidase | FAP39_15955 | Not Available | - | 3276487 - 3277458 | 36112.9 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | FAP39_15960 | Not Available | + | 3277508 - 3278260 | 27210.5 |
| winged helix-turn-helix transcriptional regulator | FAP39_15965 | Not Available | - | 3278314 - 3278754 | 15912.4 |
| carbon-nitrogen hydrolase family protein | FAP39_15970 | Not Available | - | 3278755 - 3279585 | 29947.5 |
| glutaredoxin 3 | FAP39_15975 | Not Available | - | 3279591 - 3279848 | 9517.6 |
| comf family protein | FAP39_15980 | Not Available | - | 3279887 - 3280615 | 26723.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.