Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | FAP39_15885 | Not Available | + | 3262239 - 3263153 | 33125.6 |
| cupin domain-containing protein | FAP39_15890 | Not Available | - | 3263489 - 3263947 | 17057.2 |
| hypothetical protein | FAP39_15895 | Not Available | - | 3264128 - 3264826 | 25537.7 |
| helix-turn-helix domain-containing protein | FAP39_15900 | Not Available | - | 3264823 - 3265845 | 38032.7 |
| vrr-nuc domain-containing protein | FAP39_15905 | Not Available | - | 3265842 - 3266237 | 14014.1 |
| hypothetical protein | FAP39_15910 | Not Available | - | 3266237 - 3266497 | 9972.84 |
| helix-turn-helix domain-containing protein | FAP39_15915 | Not Available | - | 3266494 - 3266757 | 9752.81 |
| site-specific integrase | FAP39_15920 | Not Available | + | 3267336 - 3268595 | 47768.7 |
| hypothetical protein | FAP39_15925 | Not Available | - | 3268610 - 3269215 | 22375.7 |
| wyl domain-containing protein | FAP39_15930 | Not Available | + | 3269379 - 3270371 | 37263.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.