Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cobalamin biosynthesis protein cbix | FAP39_15690 | Not Available | + | 3231136 - 3231687 | 20089.4 |
| hypothetical protein | FAP39_15695 | Not Available | + | 3231684 - 3231920 | 8510.68 |
| atp-dependent protease atpase subunit hslu | FAP39_15700 | Not Available | + | 3232189 - 3233499 | 48109.7 |
| alpha/beta fold hydrolase | FAP39_15705 | Not Available | + | 3233565 - 3234668 | 40353.2 |
| hypothetical protein | FAP39_15710 | Not Available | - | 3234713 - 3235180 | 16795.3 |
| duf1835 domain-containing protein | FAP39_15715 | Not Available | - | 3235275 - 3236042 | 27833.2 |
| duf805 domain-containing protein | FAP39_15720 | Not Available | + | 3236247 - 3236759 | 18548.9 |
| hypothetical protein | FAP39_15725 | Not Available | + | 3236840 - 3237613 | 28099.1 |
| hypothetical protein | FAP39_15730 | Not Available | - | 3237796 - 3238099 | 11169.3 |
| hypothetical protein | FAP39_15735 | Not Available | - | 3238099 - 3239040 | 33128.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.