Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_01105 | Not Available | - | 237941 - 238570 | 23112.6 |
| 2-isopropylmalate synthase | FAP39_01110 | Not Available | - | 238733 - 240307 | 57082.7 |
| 2-isopropylmalate synthase | FAP39_01115 | Not Available | - | 240603 - 242006 | 49409.6 |
| nad+ synthase | FAP39_01120 | Not Available | + | 242164 - 243822 | 60668.2 |
| 1-phosphofructokinase family hexose kinase | FAP39_01125 | Not Available | - | 243844 - 244791 | 33147.9 |
| mbl fold metallo-hydrolase | FAP39_01130 | Not Available | - | 244870 - 245793 | 33092.5 |
| glutamate--trna ligase | FAP39_01135 | Not Available | + | 246031 - 247356 | 49096.4 |
| gamma-glutamylcyclotransferase | FAP39_01140 | Not Available | - | 247483 - 248061 | 21352.9 |
| rrf2 family transcriptional regulator | FAP39_01145 | Not Available | + | 248153 - 248599 | 16137.8 |
| glycine cleavage system aminomethyltransferase gcvt | FAP39_01150 | Not Available | + | 248937 - 250061 | 39477.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.