Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | FAP39_01005 | Not Available | + | 216123 - 217316 | 41785.4 |
| dutp diphosphatase | FAP39_01010 | Not Available | + | 217364 - 217825 | 15797.9 |
| molybdopterin-synthase adenylyltransferase moeb | FAP39_01015 | Not Available | + | 217825 - 218874 | 37450.9 |
| m3 family metallopeptidase | FAP39_01020 | Not Available | + | 218973 - 220985 | 73740.9 |
| phosphomannomutase/phosphoglucomutase | FAP39_01025 | Not Available | - | 221118 - 222614 | 54567.0 |
| 3-deoxy-8-phosphooctulonate synthase | FAP39_01030 | Not Available | - | 222642 - 223475 | 29128.3 |
| capsule biosynthesis protein | FAP39_01035 | Not Available | - | 223479 - 225155 | 61894.5 |
| atp-binding cassette domain-containing protein | FAP39_01040 | Not Available | - | 225133 - 225792 | 24712.7 |
| permease | FAP39_01045 | Not Available | - | 226049 - 227083 | 36060.9 |
| helix-turn-helix transcriptional regulator | FAP39_01050 | Not Available | - | 227076 - 227420 | 12291.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.