Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | FAP39_00905 | Not Available | - | 195776 - 196189 | 14889.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | FAP39_00910 | Not Available | - | 196186 - 196776 | 20229.5 |
| nifu family protein | FAP39_00915 | Not Available | - | 196766 - 197329 | 19731.4 |
| universal stress protein | FAP39_00920 | Not Available | - | 197441 - 197896 | 16773.2 |
| branched-chain amino acid aminotransferase | FAP39_00925 | Not Available | - | 197956 - 198831 | 31791.7 |
| phox family phosphatase | FAP39_00930 | Not Available | - | 199022 - 200905 | 68395.6 |
| tryptophan--trna ligase | FAP39_00935 | Not Available | - | 201131 - 202165 | 37556.2 |
| rhomboid family intramembrane serine protease | FAP39_00940 | Not Available | + | 202238 - 202927 | 24730.9 |
| hypothetical protein | FAP39_00945 | Not Available | - | 202981 - 203496 | 17598.5 |
| murein biosynthesis integral membrane protein murj | FAP39_00950 | Not Available | - | 203609 - 205144 | 54744.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.