Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pyridoxamine 5'-phosphate oxidase family protein | FAP39_00655 | Not Available | + | 145175 - 145780 | 22263.4 |
| dihydrolipoyl dehydrogenase | FAP39_00660 | Not Available | - | 145886 - 147283 | 48794.9 |
| hypothetical protein | FAP39_00665 | Not Available | - | 147373 - 147843 | 16856.2 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | FAP39_00670 | Not Available | - | 147963 - 149441 | 51122.5 |
| 2-oxoglutarate dehydrogenase e1 component | FAP39_00675 | Not Available | - | 149445 - 152405 | 110060.0 |
| duf805 domain-containing protein | FAP39_00680 | Not Available | - | 152402 - 152938 | 19239.5 |
| succinate--coa ligase subunit alpha | FAP39_00685 | Not Available | - | 152999 - 153880 | 30209.4 |
| adp-forming succinate--coa ligase subunit beta | FAP39_00690 | Not Available | - | 153886 - 155082 | 42469.9 |
| hypothetical protein | FAP39_00695 | Not Available | - | 155243 - 156130 | 33438.8 |
| malate dehydrogenase | FAP39_00700 | Not Available | - | 156134 - 157096 | 33522.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.