Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| redoxin domain-containing protein | FAP39_00605 | Not Available | - | 134626 - 135231 | 21933.7 |
| argininosuccinate lyase | FAP39_00610 | Not Available | + | 135262 - 136653 | 50093.9 |
| hypothetical protein | FAP39_00615 | Not Available | + | 137036 - 137236 | 6583.11 |
| duf2834 domain-containing protein | FAP39_00620 | Not Available | + | 137309 - 137626 | 11671.6 |
| diaminopimelate decarboxylase | FAP39_00625 | Not Available | + | 137760 - 139025 | 45626.0 |
| duf4175 domain-containing protein | FAP39_00630 | Not Available | + | 139060 - 141636 | 93558.7 |
| hypothetical protein | FAP39_00635 | Not Available | - | 141667 - 142767 | 40600.4 |
| atp-binding cassette domain-containing protein | FAP39_00640 | Not Available | + | 142869 - 143546 | 24642.9 |
| cell division protein ftsx | FAP39_00645 | Not Available | + | 143543 - 144448 | 31411.1 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | FAP39_00650 | Not Available | + | 144448 - 145191 | 27815.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.