Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | FAP39_00555 | Not Available | + | 125296 - 126285 | 35080.8 |
| thioredoxin trxc | FAP39_00560 | Not Available | + | 126415 - 126846 | 15455.8 |
| geranylgeranyl reductase family protein | FAP39_00565 | Not Available | - | 126843 - 127994 | 42281.9 |
| acyl-coa thioesterase | FAP39_00570 | Not Available | + | 128083 - 128472 | 14100.0 |
| cold-shock protein | FAP39_00575 | Not Available | - | 128549 - 128755 | 7170.43 |
| energy-dependent translational throttle protein etta | FAP39_00580 | Not Available | - | 129152 - 130807 | 61498.9 |
| duf2059 domain-containing protein | FAP39_00585 | Not Available | - | 130939 - 131469 | 19866.0 |
| nicotinate-nucleotide adenylyltransferase | FAP39_00590 | Not Available | + | 131529 - 132137 | 22922.6 |
| dmt family transporter | FAP39_00595 | Not Available | - | 132169 - 133017 | 30456.2 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | FAP39_00600 | Not Available | + | 133105 - 134595 | 52756.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.