Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | FAP39_00510 | Not Available | + | 115797 - 116714 | 32783.6 |
| phosphonate monoester hydrolase | FAP39_00515 | Not Available | + | 116749 - 118407 | 61884.1 |
| tetr family transcriptional regulator | FAP39_00520 | Not Available | - | 118425 - 119048 | 23306.9 |
| Ncrna_class:srp_rna | Not Available | Not Available | + | 119410 - 119508 | Not Available |
| tetr family transcriptional regulator | FAP39_00525 | Not Available | - | 119107 - 119742 | 23776.4 |
| zn-dependent hydrolase | FAP39_00530 | Not Available | + | 119875 - 121125 | 44987.4 |
| dihydropyrimidinase | FAP39_00535 | Not Available | + | 121223 - 122686 | 53639.8 |
| abc transporter atp-binding protein | FAP39_00540 | Not Available | + | 122756 - 123541 | 28974.7 |
| abc transporter permease | FAP39_00545 | Not Available | + | 123541 - 124416 | 31182.5 |
| abc transporter permease | FAP39_00550 | Not Available | + | 124413 - 125252 | 30238.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.