Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease subunit | FAP39_00460 | Not Available | + | 101767 - 102660 | 32282.9 |
| abc transporter atp-binding protein | FAP39_00465 | Not Available | + | 102666 - 103643 | 35515.1 |
| dipeptide abc transporter atp-binding protein | FAP39_00470 | Not Available | + | 103640 - 104593 | 35144.6 |
| gntr family transcriptional regulator | FAP39_00475 | Not Available | - | 104607 - 105272 | 24679.6 |
| duf3300 domain-containing protein | FAP39_00480 | Not Available | + | 105493 - 106776 | 45584.5 |
| duf2950 domain-containing protein | FAP39_00485 | Not Available | + | 106773 - 107693 | 33278.6 |
| hypothetical protein | FAP39_00490 | Not Available | + | 107974 - 108522 | 19906.9 |
| dna polymerase y family protein | FAP39_00495 | Not Available | + | 108464 - 109942 | 55513.1 |
| dna polymerase iii subunit alpha | FAP39_00500 | Not Available | + | 109939 - 113322 | 126170.0 |
| mfs transporter | FAP39_00505 | Not Available | - | 113458 - 115641 | 78866.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.