Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_00360 | Not Available | + | 73034 - 74683 | 58414.9 |
| arac family transcriptional regulator | FAP39_00365 | Not Available | - | 74786 - 75871 | 39969.9 |
| (2fe-2s)-binding protein | FAP39_00370 | Not Available | + | 75964 - 76422 | 16409.8 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | FAP39_00375 | Not Available | + | 76426 - 78666 | 80029.0 |
| reductive dehalogenase | FAP39_00380 | Not Available | + | 78863 - 82084 | 117736.0 |
| catalase/peroxidase hpi | FAP39_00385 | Not Available | - | 82138 - 84312 | 79548.3 |
| lysr family transcriptional regulator | FAP39_00390 | Not Available | + | 84405 - 85337 | 34206.7 |
| helix-turn-helix domain-containing protein | FAP39_00395 | Not Available | - | 85348 - 86280 | 34413.4 |
| quinolinate synthase nada | FAP39_00400 | Not Available | + | 86555 - 87604 | 38203.9 |
| l-aspartate oxidase | FAP39_00405 | Not Available | + | 87615 - 89183 | 54453.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.