Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acetoacetyl-coa reductase | FAP39_00310 | Not Available | - | 59774 - 60496 | 25411.2 |
| acetyl-coa c-acetyltransferase | FAP39_00315 | Not Available | - | 60684 - 61859 | 40589.5 |
| eal domain-containing protein | FAP39_00320 | Not Available | - | 62011 - 62856 | 31705.2 |
| dna-3-methyladenine glycosylase i | FAP39_00325 | Not Available | + | 62955 - 63566 | 23551.9 |
| 2-dehydro-3-deoxyphosphooctonate aldolase | FAP39_00330 | Not Available | - | 63630 - 64052 | 15555.5 |
| lysine--trna ligase | FAP39_00335 | Not Available | + | 64384 - 66027 | 61692.1 |
| right-handed parallel beta-helix repeat-containing protein | FAP39_00340 | Not Available | + | 66218 - 68503 | 82362.4 |
| type i glyceraldehyde-3-phosphate dehydrogenase | FAP39_00345 | Not Available | - | 68730 - 69728 | 35550.6 |
| cu(i)-responsive transcriptional regulator | FAP39_00350 | Not Available | - | 69900 - 70292 | 14670.6 |
| copper-translocating p-type atpase | FAP39_00355 | Not Available | - | 70292 - 72751 | 86774.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.