Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aa3-type cytochrome c oxidase subunit iv | FAP39_00215 | Not Available | + | 43932 - 44066 | 4705.75 |
| hypothetical protein | FAP39_00220 | Not Available | + | 44095 - 44748 | 24016.4 |
| azld domain-containing protein | FAP39_00225 | Not Available | - | 44753 - 45079 | 11592.7 |
| branched-chain amino acid abc transporter permease | FAP39_00230 | Not Available | - | 45076 - 45789 | 25485.5 |
| formate dehydrogenase accessory sulfurtransferase fdhd | FAP39_00235 | Not Available | + | 45845 - 46744 | 32926.3 |
| molybdenum cofactor guanylyltransferase moba | FAP39_00240 | Not Available | + | 46799 - 47422 | 21708.9 |
| molybdopterin-guanine dinucleotide biosynthesis protein b | FAP39_00245 | Not Available | + | 47419 - 47910 | 18126.7 |
| molybdopterin molybdenumtransferase moea | FAP39_00250 | Not Available | + | 47907 - 49166 | 44341.0 |
| hypothetical protein | FAP39_00255 | Not Available | - | 49176 - 50189 | 36923.2 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | + | 50414 - 50822 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.