Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia litoralis strain CL-ES2
Accession NumberSULI00000000.1
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase | FAP39_00165 | Not Available | + | 31684 - 32463 | 28467.6 |
| molybdenum cofactor biosynthesis protein b | FAP39_00170 | Not Available | + | 32464 - 33006 | 20045.7 |
| hlyd family efflux transporter periplasmic adaptor subunit | FAP39_00175 | Not Available | + | 33096 - 34553 | 52522.0 |
| efflux rnd transporter permease subunit | FAP39_00180 | Not Available | + | 34557 - 37946 | 121989.0 |
| hypothetical protein | FAP39_00185 | Not Available | - | 37963 - 38781 | 29543.6 |
| yqge/algh family protein | FAP39_00190 | Not Available | + | 38963 - 39529 | 19896.0 |
| threonylcarbamoyl-amp synthase | FAP39_00195 | Not Available | - | 39540 - 40517 | 34108.0 |
| acyl-coa dehydrogenase | FAP39_00200 | Not Available | + | 40604 - 42322 | 61397.1 |
| mbl fold metallo-hydrolase | FAP39_00205 | Not Available | + | 42319 - 43365 | 38922.2 |
| hypothetical protein | FAP39_00210 | Not Available | + | 43374 - 43832 | 16425.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.