Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BCL90_0204 | Not Available | - | 272833 - 273708 | 32861.5 |
| Ncrna_class:other | Not Available | Not Available | + | 273802 - 273881 | Not Available |
| duf218 domain-containing protein | BCL90_0205 | Not Available | - | 273711 - 274958 | 47008.8 |
| tonb-linked susc/raga family outer membrane protein | BCL90_0206 | Not Available | + | 275284 - 278568 | 118733.0 |
| putative outer membrane starch-binding protein | BCL90_0207 | Not Available | + | 278579 - 280108 | 56946.6 |
| peptidase s24-like | BCL90_0208 | Not Available | - | 280810 - 281427 | 23409.1 |
| hypothetical protein | BCL90_0209 | Not Available | + | 281554 - 282720 | 45514.2 |
| hepn domain-containing protein | BCL90_0210 | Not Available | + | 282686 - 283537 | 32452.7 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | BCL90_0212 | Not Available | + | 284254 - 285093 | 31397.3 |
| 2-deoxy-d-gluconate 3-dehydrogenase | BCL90_0213 | Not Available | + | 285179 - 285943 | 26954.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
