Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Putative n-acetylmuramidase | BCL90_1660 | Not Available | + | 1907204 - 1907773 | 20576.1 |
| 5s ribosomal rna | Not Available | Not Available | + | 253 - 364 | Not Available |
| Ncrna_class:other | Not Available | Not Available | + | 645 - 742 | Not Available |
| antitoxin component ywqk of ywqjk toxin-antitoxin module | BCL90_0001 | Not Available | - | 122 - 1480 | 51933.5 |
| 23s ribosomal rna | Not Available | Not Available | + | 2621 - 5499 | Not Available |
| two-component sensor histidine kinase | BCL90_0002 | Not Available | - | 2355 - 4604 | 85796.1 |
| arac family transcriptional regulator | BCL90_0003 | Not Available | - | 5032 - 5913 | 34281.2 |
| hypothetical protein | BCL90_0004 | Not Available | - | 6409 - 7299 | 33541.5 |
| 2-iminobutanoate/2-iminopropanoate deaminase | BCL90_0005 | Not Available | - | 7488 - 7925 | 16112.5 |
| Ncrna_class:other | Not Available | Not Available | + | 8279 - 8352 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
