Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | BCL90_0080 | Not Available | - | 122013 - 122753 | 26183.3 |
| crp-like camp-binding protein | BCL90_0081 | Not Available | + | 122874 - 123449 | 21932.7 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | BCL90_0082 | Not Available | + | 123793 - 124587 | 28584.5 |
| dinb family protein | BCL90_0083 | Not Available | + | 124919 - 125431 | 18931.8 |
| putative dna-binding transcriptional regulator yafy | BCL90_0084 | Not Available | + | 125594 - 126595 | 39438.9 |
| putative damage-inducible protein dinb | BCL90_0085 | Not Available | - | 126835 - 127305 | 18430.2 |
| hypothetical protein | BCL90_0086 | Not Available | - | 127485 - 127736 | 9446.82 |
| hypothetical protein | BCL90_0087 | Not Available | + | 128042 - 128359 | 11890.6 |
| cobalt-zinc-cadmium resistance protein czca | BCL90_0088 | Not Available | + | 128472 - 132848 | 160740.0 |
| cobalt-zinc-cadmium efflux system membrane fusion protein | BCL90_0089 | Not Available | + | 132861 - 134027 | 43685.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
