Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-lactamase regulating signal transducer with metallopeptidase domain | BCL90_0041 | Not Available | + | 73973 - 76072 | 80000.1 |
| dna replication and repair protein recn | BCL90_0042 | Not Available | + | 76172 - 77824 | 61408.8 |
| carboxypeptidase-like protein | BCL90_0043 | Not Available | + | 78125 - 79366 | 47299.3 |
| carboxypeptidase-like protein | BCL90_0044 | Not Available | + | 79862 - 81100 | 47135.8 |
| dna repair photolyase | BCL90_0045 | Not Available | + | 81215 - 82282 | 40575.8 |
| glutathione synthetase-like protein | BCL90_0046 | Not Available | + | 82426 - 83298 | 33654.2 |
| atp-dependent clp protease atp-binding subunit clpc | BCL90_0047 | Not Available | - | 83490 - 86042 | 94948.6 |
| type ix secretion system porp/sprf family membrane protein | BCL90_0048 | Not Available | - | 86666 - 87535 | 31712.0 |
| gliding motility-associated-like protein | BCL90_0049 | Not Available | - | 87540 - 88990 | 50002.2 |
| chey-like chemotaxis protein | BCL90_0055 | Not Available | + | 94766 - 95698 | 35209.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
