Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fasciclin domain-containing protein | BCL90_5204 | Not Available | + | 5920842 - 5922182 | 50375.1 |
| putative surface protein with fasciclin (fas1) repeats | BCL90_5205 | Not Available | + | 5922186 - 5923211 | 36988.1 |
| carboxypeptidase family protein | BCL90_5206 | Not Available | + | 5923222 - 5926533 | 122593.0 |
| uncharacterized protein (tigr03437 family) | BCL90_5207 | Not Available | + | 5926551 - 5928719 | 74620.1 |
| hypothetical protein | BCL90_5208 | Not Available | + | 5928779 - 5929093 | 12327.0 |
| hypothetical protein | BCL90_5209 | Not Available | - | 5929279 - 5929833 | 20008.9 |
| hypothetical protein | BCL90_5210 | Not Available | - | 5929857 - 5930087 | 8879.93 |
| transcriptional regulator glxa family with amidase domain | BCL90_5211 | Not Available | + | 5930422 - 5931339 | 34099.2 |
| dj-1/pfpi family protein | BCL90_5212 | Not Available | + | 5931429 - 5932199 | 28031.3 |
| hypothetical protein | BCL90_5213 | Not Available | - | 5932332 - 5932880 | 20782.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
