Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked susc/raga family outer membrane protein | BCL90_5194 | Not Available | - | 5904880 - 5908332 | 126832.0 |
| fecr family protein | BCL90_5195 | Not Available | - | 5908430 - 5909461 | 39237.3 |
| rna polymerase sigma-70 factor (ecf subfamily) | BCL90_5196 | Not Available | - | 5909550 - 5910107 | 21863.1 |
| hypothetical protein | BCL90_5197 | Not Available | + | 5910365 - 5910640 | 10496.8 |
| rna polymerase sigma-70 factor (ecf subfamily) | BCL90_5198 | Not Available | + | 5911304 - 5911915 | 23458.3 |
| fecr family protein | BCL90_5199 | Not Available | + | 5911995 - 5913011 | 37643.9 |
| tonb-dependent receptor | BCL90_5200 | Not Available | + | 5913178 - 5916741 | 132055.0 |
| hypothetical protein | BCL90_5201 | Not Available | + | 5916741 - 5918474 | 63258.7 |
| hypothetical protein | BCL90_5202 | Not Available | + | 5918474 - 5919709 | 46270.5 |
| putative surface protein with fasciclin (fas1) repeats | BCL90_5203 | Not Available | + | 5919723 - 5920832 | 41166.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
