Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent aldehyde dehydrogenase | BCL90_5122 | Not Available | + | 5812710 - 5814296 | 56328.6 |
| proline racemase | BCL90_5123 | Not Available | + | 5814289 - 5815290 | 36673.0 |
| d-amino-acid dehydrogenase | BCL90_5124 | Not Available | + | 5815331 - 5816572 | 45514.7 |
| arac-like dna-binding protein | BCL90_5125 | Not Available | + | 5817036 - 5817938 | 33724.4 |
| uncharacterized protein duf885 | BCL90_5126 | Not Available | + | 5818022 - 5819800 | 68533.2 |
| amino acid/polyamine/organocation transporter (apc superfamily) | BCL90_5127 | Not Available | + | 5819841 - 5821280 | 52359.5 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | BCL90_5128 | Not Available | + | 5821369 - 5823663 | 86703.9 |
| hypothetical protein | BCL90_5129 | Not Available | + | 5823814 - 5824305 | 18988.2 |
| nipsnap protein | BCL90_5130 | Not Available | + | 5824256 - 5825119 | 33354.3 |
| hypothetical protein | BCL90_5131 | Not Available | - | 5825135 - 5825419 | 10906.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
