Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | BCL90_5102 | Not Available | - | 5782818 - 5784065 | 45989.6 |
| putative integral membrane protein (tigr00698 family) | BCL90_5103 | Not Available | + | 5784396 - 5785766 | 48734.6 |
| sugar phosphate isomerase/epimerase | BCL90_5104 | Not Available | + | 5786516 - 5787403 | 32315.2 |
| hypothetical protein | BCL90_5105 | Not Available | - | 5787443 - 5788069 | 23422.3 |
| histidine kinase | BCL90_5106 | Not Available | - | 5788289 - 5789428 | 43810.5 |
| lyttr family two component transcriptional regulator | BCL90_5107 | Not Available | - | 5789663 - 5790388 | 27890.7 |
| luciferase family oxidoreductase group 1 | BCL90_5108 | Not Available | + | 5790732 - 5791826 | 40144.2 |
| rna polymerase sigma-70 factor (ecf subfamily) | BCL90_5109 | Not Available | + | 5792256 - 5792819 | 20946.5 |
| fecr family protein | BCL90_5110 | Not Available | + | 5792883 - 5793827 | 34961.3 |
| tonb-linked susc/raga family outer membrane protein | BCL90_5111 | Not Available | + | 5793946 - 5797290 | 120996.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
