Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna end-binding protein ku | BCL90_5051 | Not Available | + | 5728181 - 5728951 | 29391.7 |
| acetyl esterase/lipase | BCL90_5052 | Not Available | - | 5729071 - 5730189 | 40105.3 |
| spoiiaa-like protein | BCL90_5053 | Not Available | + | 5730326 - 5730694 | 13572.3 |
| hypothetical protein | BCL90_5054 | Not Available | + | 5730712 - 5730864 | 5194.12 |
| small conductance mechanosensitive channel | BCL90_5055 | Not Available | + | 5730890 - 5731696 | 29705.9 |
| two-component system phosphate regulon response regulator phob | BCL90_5056 | Not Available | - | 5731701 - 5732069 | 13817.8 |
| light-regulated signal transduction histidine kinase (bacteriophytochrome) | BCL90_5057 | Not Available | + | 5732212 - 5734425 | 83438.4 |
| two-component system response regulator | BCL90_5058 | Not Available | + | 5734426 - 5734845 | 15781.0 |
| heme oxygenase | BCL90_5059 | Not Available | + | 5734918 - 5735502 | 22014.4 |
| hypothetical protein | BCL90_5060 | Not Available | + | 5735686 - 5735865 | 6397.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
