Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| recombination protein reca | BCL90_0186 | Not Available | - | 248148 - 249161 | 36249.8 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | BCL90_0187 | Not Available | - | 249296 - 249961 | 25070.4 |
| Ncrna_class:other | Not Available | Not Available | + | 250216 - 250373 | Not Available |
| uncharacterized protein duf3347 | BCL90_0188 | Not Available | + | 250492 - 250968 | 17515.3 |
| copa family copper-resistance protein | BCL90_0189 | Not Available | + | 250984 - 253275 | 86891.7 |
| hypothetical protein | BCL90_0190 | Not Available | - | 253277 - 254236 | 36947.8 |
| linoleoyl-coa desaturase | BCL90_0191 | Not Available | + | 254441 - 255538 | 42949.7 |
| linoleoyl-coa desaturase | BCL90_0192 | Not Available | + | 255528 - 256589 | 41137.4 |
| dha1 family arabinose polymer transporter-like mfs transporter | BCL90_0193 | Not Available | - | 257358 - 258542 | 41677.4 |
| hypothetical protein | BCL90_0194 | Not Available | - | 259083 - 259277 | 7278.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
