Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter alluvionis |
| Strain | strain DSM 19624 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1859053 bp
Thymine Count
1859250 bp
Guanine Count
1162087 bp
Cytosine Count
1155672 bp
Genome Length
6037645 bp
Protein-coding Genes
4997 genes
Non-Coding Genes
196 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Major tail protein | BCL90_1650 | Not Available | - | 1893545 - 1898001 | 146614.0 |
| Minor tail protein | BCL90_1651 | Not Available | - | 1898107 - 1898727 | 21237.2 |
| Minor tail protein | BCL90_1652 | Not Available | - | 1898759 - 1899376 | 21412.3 |
| Minor tail protein | BCL90_1653 | Not Available | - | 1899401 - 1900012 | 20951.8 |
| Cyanobacterial phosphoribosylglycinamide formyltransferase | BCL90_1654 | Not Available | - | 1900019 - 1900957 | 34900.3 |
| abc-type branched-subunit amino acid transport system substrate-binding protein | BCL90_1655 | Not Available | - | 1900959 - 1902083 | 41427.8 |
| Piuc | BCL90_1656 | Not Available | - | 1902093 - 1902809 | 27299.6 |
| Carbamoyltransferase | BCL90_1657 | Not Available | + | 1903009 - 1904712 | 63310.5 |
| Hypothetical protein | BCL90_1658 | Not Available | + | 1904696 - 1905892 | 45394.3 |
| phytanoyl-coa dioxygenase phyh | BCL90_1659 | Not Available | + | 1905895 - 1906908 | 39021.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
