Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Gene transfer aget (gta) orfg9-like phage major tail protein | DD563_07370 | Not Available | - | 1521349 - 1521762 | 14557.9 |
| duf3168 domain-containing protein | DD563_07375 | Not Available | - | 1521787 - 1522200 | 14507.1 |
| Head-tail adaptor protein | DD563_07380 | Not Available | - | 1522197 - 1522535 | 12155.3 |
| Dna packaging/head-tail-connector | DD563_07385 | Not Available | - | 1522535 - 1523134 | 21427.0 |
| Phage major capsid protein | DD563_07390 | Not Available | - | 1523287 - 1524480 | 42251.6 |
| Putative prohead protease | DD563_07395 | Not Available | - | 1524516 - 1525070 | 19861.0 |
| hypothetical protein | DD563_07400 | Not Available | - | 1525121 - 1525360 | 8832.83 |
| Portal protein | DD563_07405 | Not Available | - | 1525350 - 1526558 | 43290.3 |
| Large packaging protein | DD563_07410 | Not Available | - | 1526701 - 1528044 | 48756.3 |
| hypothetical protein | DD563_07415 | Not Available | - | 1527974 - 1528321 | 13215.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.