Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agathobacter ruminis strain JK623
Accession NumberPDYG00000000.1
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| elongation subunit of dna-dependent dna polymerase | CSX02_01915 | Not Available | + | 379280 - 380383 | 43586.9 |
| chemotaxis protein cher | CSX02_01920 | Not Available | - | 380365 - 381141 | 30327.5 |
| 30s ribosomal protein s1 | CSX02_01925 | Not Available | - | 381220 - 382353 | 41273.1 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | CSX02_01930 | Not Available | - | 382337 - 383191 | 31503.6 |
| (d)cmp kinase | CSX02_01935 | Not Available | - | 383181 - 383855 | 24755.4 |
| aminoacetone oxidase family fad-binding enzyme | CSX02_01940 | Not Available | - | 383870 - 385099 | 44823.0 |
| murr/rpir family transcriptional regulator | CSX02_01945 | Not Available | - | 385092 - 386021 | 34712.8 |
| serine acetyltransferase | CSX02_01950 | Not Available | - | 386038 - 386991 | 35937.9 |
| 30s ribosomal protein s21 | CSX02_01955 | Not Available | - | 387066 - 387242 | 6906.38 |
| alanine--trna ligase | CSX02_01960 | Not Available | - | 387369 - 390029 | 98013.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
