Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Agathobacter |
| Species | Agathobacter ruminis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agathobacter ruminis strain JK623
Accession NumberPDYG00000000.1
Gene Summary
Adenine Count
812134 bp
Thymine Count
802139 bp
Guanine Count
630809 bp
Cytosine Count
613542 bp
Genome Length
2858624 bp
Protein-coding Genes
2544 genes
Non-Coding Genes
78 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease p protein component | CSX02_02925 | Not Available | + | 616718 - 617062 | 13205.1 |
| membrane protein insertion efficiency factor yidd | CSX02_02930 | Not Available | + | 617083 - 617292 | 7823.85 |
| stage iii sporulation protein j | CSX02_02935 | Not Available | + | 617313 - 618593 | 47604.2 |
| dna-binding protein | CSX02_02940 | Not Available | + | 618620 - 619243 | 23630.2 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CSX02_02945 | Not Available | + | 619345 - 620721 | 50905.0 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | CSX02_02950 | Not Available | + | 620728 - 622656 | 71980.0 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | CSX02_02955 | Not Available | + | 622646 - 623359 | 26363.8 |
| alpha/beta hydrolase | CSX02_02960 | Not Available | - | 623362 - 624327 | 36440.0 |
| histidine kinase | CSX02_02965 | Not Available | + | 624498 - 625520 | 39227.1 |
| dna-binding response regulator | CSX02_02970 | Not Available | + | 625524 - 626168 | 24055.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
