Agathobacter ruminis strain JK623

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter ruminis strain JK623 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits strict anaerobic growth characteristics. This organism is part of the diverse microbial community found in the gastrointestinal tracts of ruminants, where it likely plays a role in the fermentation of complex carbohydrates. The rod shape of A. ruminis strain JK623 may facilitate its movement and colonization within the anaerobic environment of the rumen, where it can interact with various substrates and other microbial populations. Its anaerobic requirement suggests that it is adapted to conditions where oxygen is limited, which is typical of the ruminal environment. Given its specific growth conditions and morphological traits, A. ruminis strain JK623 may contribute to the overall metabolic processes that aid in the digestion of fibrous plant materials in ruminants. Understanding the functional role of this microbe in the rumen could provide insights into the complex interactions that enhance nutrient absorption and microbial symbiosis in these animals, potentially influencing agricultural practices related to livestock management and feed efficiency.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter ruminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agathobacter ruminis strain JK623

Accession NumberPDYG00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2544 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
mate family efflux transporterCSX02_00015Not Available-2282 - 361348572.4
had family hydrolaseCSX02_00020Not Available+3765 - 461631270.1
elongation factor pCSX02_00025Not Available+4691 - 524820376.1
5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferaseCSX02_00030Not Available-5309 - 756186087.4
lysr family transcriptional regulatorCSX02_00035Not Available+7695 - 859134033.9
hypothetical proteinCSX02_00040Not Available-8634 - 902914605.5
transcriptional repressor nrdrCSX02_00045Not Available-9136 - 958817704.3
Ncrna_class:srp_rnaNot AvailableNot Available+9691 - 9951Not Available
redox-regulated atpase ychfCSX02_00050Not Available-9741 - 1084139733.3
plasmid stabilization proteinCSX02_00055Not Available-11115 - 1142912112.4

Displaying genes 41 – 50 of 2622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites