Agathobacter ruminis strain JK623

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Agathobacter

Description

Agathobacter ruminis strain JK623 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 37.0°C and exhibits strict anaerobic growth characteristics. This organism is part of the diverse microbial community found in the gastrointestinal tracts of ruminants, where it likely plays a role in the fermentation of complex carbohydrates. The rod shape of A. ruminis strain JK623 may facilitate its movement and colonization within the anaerobic environment of the rumen, where it can interact with various substrates and other microbial populations. Its anaerobic requirement suggests that it is adapted to conditions where oxygen is limited, which is typical of the ruminal environment. Given its specific growth conditions and morphological traits, A. ruminis strain JK623 may contribute to the overall metabolic processes that aid in the digestion of fibrous plant materials in ruminants. Understanding the functional role of this microbe in the rumen could provide insights into the complex interactions that enhance nutrient absorption and microbial symbiosis in these animals, potentially influencing agricultural practices related to livestock management and feed efficiency.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusAgathobacter
SpeciesAgathobacter ruminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agathobacter ruminis strain JK623


Gene Summary

Adenine Count

812134 bp

Thymine Count

802139 bp

Guanine Count

630809 bp

Cytosine Count

613542 bp

Genome Length

2858624 bp

Protein-coding Genes

2544 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
precorrin-4 c(11)-methyltransferaseCSX02_07135Not Available-1492980 - 149373827560.5
cobalamin biosynthesis protein cbidCSX02_07140Not Available-1493755 - 149486740504.6
threonine-phosphate decarboxylaseCSX02_07145Not Available-1494864 - 149659463972.4
cobalamin biosynthesis protein cobdCSX02_07150Not Available-1496605 - 149755835543.8
histidine phosphatase family proteinCSX02_07155Not Available-1497515 - 149813823146.4
hypothetical proteinCSX02_07160Not Available-1498111 - 149852415977.3
adenosylcobinamide-gdp ribazoletransferaseCSX02_07165Not Available-1498546 - 149937030301.9
cobinamide kinaseCSX02_07170Not Available-1499319 - 149985519663.9
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseCSX02_07175Not Available-1499852 - 150092838176.4
cobyric acid synthase cobqCSX02_07180Not Available-1500918 - 150240855038.8

Displaying genes 1441 – 1450 of 2622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites