Rhizobium tubonense strain CCBAU 85046

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tubonense strain CCBAU 85046 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and aerobic metabolism. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for warm environments, which is typical for many soil-dwelling bacteria. As a member of the genus Rhizobium, this strain is likely involved in symbiotic relationships with legumes, facilitating nitrogen fixation, which is essential for soil fertility and plant growth. Its aerobic requirement indicates that R. tubonense strain CCBAU 85046 thrives in oxygen-rich environments, which is crucial for its metabolic processes. The specific adaptations of this strain to its ecological niche may enhance its effectiveness in promoting plant health and soil quality. The optimization of growth conditions, particularly temperature and oxygen levels, could provide insights into its potential applications in sustainable agriculture, particularly in enhancing crop yields through biological nitrogen fixation in leguminous crops. Understanding these traits further may contribute to advancements in microbial inoculant development for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tubonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tubonense strain CCBAU 85046


Gene Summary

Adenine Count

1338254 bp

Thymine Count

1325510 bp

Guanine Count

1929597 bp

Cytosine Count

1947151 bp

Genome Length

6540512 bp

Protein-coding Genes

6051 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Minor tail proteinCPY51_02255Not Available-449593 - 45048331541.9
Tail proteinCPY51_02260Not Available-450480 - 45112123045.5
hypothetical proteinCPY51_02265Not Available-451438 - 45308157112.5
Putative tail tape measure proteinCPY51_02270Not Available-453200 - 45377819378.9
hypothetical proteinCPY51_02275Not Available-453962 - 4541627490.11
hypothetical proteinCPY51_02280Not Available-454189 - 45455112558.0
Gene transfer aget (gta) orfg9-like phage major tail proteinCPY51_02285Not Available-454551 - 45495814295.0
Tail proteinCPY51_02290Not Available-455040 - 45544114353.3
Head closure proteinCPY51_02295Not Available-455548 - 45588312579.0
hypothetical proteinCPY51_02300Not Available-455886 - 45645520519.0

Displaying genes 1 – 10 of 6114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm00034715-amino-6-(5-phospho-D-ribosylamino)uracilC9H13N4O9PChemical structure of 5-amino-6-(5-phospho-D-ribosylamino)uracilNot available
Average352.197Da
Monoisotopic352.0431122Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da
BASm0003537(R)-3-hydroxy-2-oxo-4-phosphooxybutanoateC4H4O8PChemical structure of (R)-3-hydroxy-2-oxo-4-phosphooxybutanoateNot available
Average211.043Da
Monoisotopic210.9660248Da
BASm0003559D-arabinitol 1-phosphateC5H11O8PChemical structure of D-arabinitol 1-phosphateNot available
Average230.11Da
Monoisotopic230.0202515Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da

Displaying 61–70 of 139 metabolites