Rhizobium tubonense strain CCBAU 85046

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tubonense strain CCBAU 85046 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and aerobic metabolism. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for warm environments, which is typical for many soil-dwelling bacteria. As a member of the genus Rhizobium, this strain is likely involved in symbiotic relationships with legumes, facilitating nitrogen fixation, which is essential for soil fertility and plant growth. Its aerobic requirement indicates that R. tubonense strain CCBAU 85046 thrives in oxygen-rich environments, which is crucial for its metabolic processes. The specific adaptations of this strain to its ecological niche may enhance its effectiveness in promoting plant health and soil quality. The optimization of growth conditions, particularly temperature and oxygen levels, could provide insights into its potential applications in sustainable agriculture, particularly in enhancing crop yields through biological nitrogen fixation in leguminous crops. Understanding these traits further may contribute to advancements in microbial inoculant development for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tubonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tubonense strain CCBAU 85046


Gene Summary

Adenine Count

1338254 bp

Thymine Count

1325510 bp

Guanine Count

1929597 bp

Cytosine Count

1947151 bp

Genome Length

6540512 bp

Protein-coding Genes

6051 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Minor tail proteinCPY51_02255Not Available-449593 - 45048331541.9
Tail proteinCPY51_02260Not Available-450480 - 45112123045.5
hypothetical proteinCPY51_02265Not Available-451438 - 45308157112.5
Putative tail tape measure proteinCPY51_02270Not Available-453200 - 45377819378.9
hypothetical proteinCPY51_02275Not Available-453962 - 4541627490.11
hypothetical proteinCPY51_02280Not Available-454189 - 45455112558.0
Gene transfer aget (gta) orfg9-like phage major tail proteinCPY51_02285Not Available-454551 - 45495814295.0
Tail proteinCPY51_02290Not Available-455040 - 45544114353.3
Head closure proteinCPY51_02295Not Available-455548 - 45588312579.0
hypothetical proteinCPY51_02300Not Available-455886 - 45645520519.0

Displaying genes 1 – 10 of 6114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003208L-2-acetamido-6-oxoheptanedioateC9H11NO6Chemical structure of L-2-acetamido-6-oxoheptanedioateNot available
Average229.189Da
Monoisotopic229.059734238Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da

Displaying 41–50 of 139 metabolites