Rhizobium tubonense strain CCBAU 85046

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tubonense strain CCBAU 85046 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and aerobic metabolism. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for warm environments, which is typical for many soil-dwelling bacteria. As a member of the genus Rhizobium, this strain is likely involved in symbiotic relationships with legumes, facilitating nitrogen fixation, which is essential for soil fertility and plant growth. Its aerobic requirement indicates that R. tubonense strain CCBAU 85046 thrives in oxygen-rich environments, which is crucial for its metabolic processes. The specific adaptations of this strain to its ecological niche may enhance its effectiveness in promoting plant health and soil quality. The optimization of growth conditions, particularly temperature and oxygen levels, could provide insights into its potential applications in sustainable agriculture, particularly in enhancing crop yields through biological nitrogen fixation in leguminous crops. Understanding these traits further may contribute to advancements in microbial inoculant development for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tubonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tubonense strain CCBAU 85046


Gene Summary

Adenine Count

1338254 bp

Thymine Count

1325510 bp

Guanine Count

1929597 bp

Cytosine Count

1947151 bp

Genome Length

6540512 bp

Protein-coding Genes

6051 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Minor tail proteinCPY51_02255Not Available-449593 - 45048331541.9
Tail proteinCPY51_02260Not Available-450480 - 45112123045.5
hypothetical proteinCPY51_02265Not Available-451438 - 45308157112.5
Putative tail tape measure proteinCPY51_02270Not Available-453200 - 45377819378.9
hypothetical proteinCPY51_02275Not Available-453962 - 4541627490.11
hypothetical proteinCPY51_02280Not Available-454189 - 45455112558.0
Gene transfer aget (gta) orfg9-like phage major tail proteinCPY51_02285Not Available-454551 - 45495814295.0
Tail proteinCPY51_02290Not Available-455040 - 45544114353.3
Head closure proteinCPY51_02295Not Available-455548 - 45588312579.0
hypothetical proteinCPY51_02300Not Available-455886 - 45645520519.0

Displaying genes 1 – 10 of 6114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002026acrylateC3H3O2Chemical structure of acrylate10344-93-1
Average71.056Da
Monoisotopic71.013852917Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm0002665prostaglandin F2alphaC20H33O5Chemical structure of prostaglandin F2alpha0551-11-1
Average353.48Da
Monoisotopic353.2333477Da
BASm0002666prostaglandin H2C20H31O5Chemical structure of prostaglandin H242935-17-1
Average351.464Da
Monoisotopic351.2176977Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da

Displaying 31–40 of 139 metabolites