Rhizobium tubonense strain CCBAU 85046

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tubonense strain CCBAU 85046 is a Gram-negative, rod-shaped bacterium characterized by its non-spore-forming nature and aerobic metabolism. This strain exhibits optimal growth at a temperature of 29.0°C, suggesting a preference for warm environments, which is typical for many soil-dwelling bacteria. As a member of the genus Rhizobium, this strain is likely involved in symbiotic relationships with legumes, facilitating nitrogen fixation, which is essential for soil fertility and plant growth. Its aerobic requirement indicates that R. tubonense strain CCBAU 85046 thrives in oxygen-rich environments, which is crucial for its metabolic processes. The specific adaptations of this strain to its ecological niche may enhance its effectiveness in promoting plant health and soil quality. The optimization of growth conditions, particularly temperature and oxygen levels, could provide insights into its potential applications in sustainable agriculture, particularly in enhancing crop yields through biological nitrogen fixation in leguminous crops. Understanding these traits further may contribute to advancements in microbial inoculant development for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tubonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tubonense strain CCBAU 85046


Gene Summary

Adenine Count

1338254 bp

Thymine Count

1325510 bp

Guanine Count

1929597 bp

Cytosine Count

1947151 bp

Genome Length

6540512 bp

Protein-coding Genes

6051 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Minor tail proteinCPY51_02255Not Available-449593 - 45048331541.9
Tail proteinCPY51_02260Not Available-450480 - 45112123045.5
hypothetical proteinCPY51_02265Not Available-451438 - 45308157112.5
Putative tail tape measure proteinCPY51_02270Not Available-453200 - 45377819378.9
hypothetical proteinCPY51_02275Not Available-453962 - 4541627490.11
hypothetical proteinCPY51_02280Not Available-454189 - 45455112558.0
Gene transfer aget (gta) orfg9-like phage major tail proteinCPY51_02285Not Available-454551 - 45495814295.0
Tail proteinCPY51_02290Not Available-455040 - 45544114353.3
Head closure proteinCPY51_02295Not Available-455548 - 45588312579.0
hypothetical proteinCPY51_02300Not Available-455886 - 45645520519.0

Displaying genes 1 – 10 of 6114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001200beta-maltoseC12H22O11Chemical structure of beta-maltoseNot available
Average342.2965Da
Monoisotopic342.1162115Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001758(9Z,12Z)-octadecadienoateC18H31O2Chemical structure of (9Z,12Z)-octadecadienoateNot available
Average279.445Da
Monoisotopic279.2329538Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 11–20 of 139 metabolites