Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Herbinix
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Herbinix |
| Species | Herbinix luporum |
| Strain | strain SD1D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | Not Available |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | 45 |
| Temperature range | thermophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
845452 bp
Thymine Count
844048 bp
Guanine Count
458713 bp
Cytosine Count
461139 bp
Genome Length
2609352 bp
Protein-coding Genes
2309 genes
Non-Coding Genes
141 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Attl | Not Available | Not Available | + | 1538118 - 1538131 | Not Available |
| Attl | Not Available | Not Available | + | 1543270 - 1543281 | Not Available |
| Site-specific recombinase for integration and excision | SD1D_RS12270 | Not Available | + | 1545391 - 1545699 | 11975.3 |
| recombinase | SD1D_RS12275 | Not Available | + | 1545635 - 1546057 | 16595.1 |
| polymorphic toxin type 35 domain-containing protein | SD1D_RS07175 | Not Available | + | 1546285 - 1547013 | 27270.1 |
| hypothetical protein | SD1D_RS07180 | Not Available | + | 1547046 - 1547582 | 21248.3 |
| hypothetical protein | SD1D_RS07185 | Not Available | - | 1547962 - 1548795 | 32137.2 |
| Putative transposase a | SD1D_RS12440 | Not Available | + | 1548924 - 1549181 | 9749.86 |
| Putative transposase orfb | SD1D_RS07190 | Not Available | + | 1549231 - 1550091 | 33320.4 |
| shoct domain-containing protein | SD1D_RS07195 | Not Available | - | 1550217 - 1550462 | 9516.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
