Herbinix luporum strain SD1D

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Herbinix

Description

Herbinix luporum strain SD1D is a Gram-positive, non-spore-forming bacterium that thrives in anaerobic conditions, with an optimal growth temperature of 45.0°C. This strain's Gram-positive nature indicates the presence of a thick peptidoglycan layer in its cell wall, which may contribute to its resilience in specific environmental conditions. The inability to form spores suggests that this microbe may rely on alternative survival strategies under adverse conditions, such as metabolic versatility or the ability to enter a viable but non-culturable state. The optimal temperature of 45.0°C suggests that Herbinix luporum strain SD1D is well adapted to thermophilic environments, potentially influencing its habitat preferences. Such a temperature requirement may indicate a niche in hot springs, compost piles, or other thermally enriched environments where anaerobic conditions prevail. This strain's anaerobic requirement highlights its potential role in biogeochemical cycles, particularly in the degradation of organic matter under low-oxygen conditions. The metabolic processes employed by Herbinix luporum strain SD1D could be significant in the breakdown of complex organic compounds, thus contributing to nutrient cycling in thermophilic ecosystems. Overall, the unique combination of traits in this strain points to its potential involvement in anaerobic processes in high-temperature environments, which could provide insights into microbial adaptation and ecosystem functioning under extreme conditions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusHerbinix
SpeciesHerbinix luporum
Strainstrain SD1D

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature45
Temperature rangethermophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbinix luporum strain SD1D


Gene Summary

Adenine Count

845452 bp

Thymine Count

844048 bp

Guanine Count

458713 bp

Cytosine Count

461139 bp

Genome Length

2609352 bp

Protein-coding Genes

2309 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1538118 - 1538131Not Available
AttlNot AvailableNot Available+1543270 - 1543281Not Available
Site-specific recombinase for integration and excisionSD1D_RS12270Not Available+1545391 - 154569911975.3
recombinaseSD1D_RS12275Not Available+1545635 - 154605716595.1
polymorphic toxin type 35 domain-containing proteinSD1D_RS07175Not Available+1546285 - 154701327270.1
hypothetical proteinSD1D_RS07180Not Available+1547046 - 154758221248.3
hypothetical proteinSD1D_RS07185Not Available-1547962 - 154879532137.2
Putative transposase aSD1D_RS12440Not Available+1548924 - 15491819749.86
Putative transposase orfbSD1D_RS07190Not Available+1549231 - 155009133320.4
shoct domain-containing proteinSD1D_RS07195Not Available-1550217 - 15504629516.52

Displaying genes 1 – 10 of 2450 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites