Formosa agariphila KMM 3901 strain type strain: KMM 3901

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Formosa

Description

Formosa agariphila KMM 3901 is a Gram-negative, rod-shaped bacterium characterized as a non-spore-forming organism that exhibits facultative aerobe/anaerobe metabolic capabilities. This strain thrives optimally at a temperature of 16.0 °C, indicating a preference for moderate thermal conditions. The facultative nature of its oxygen requirement suggests that F. agariphila KMM 3901 can adapt to varying oxygen levels, allowing it to occupy diverse ecological niches, particularly in environments where oxygen availability fluctuates. The unique combination of its Gram-negative classification and rod shape positions F. agariphila KMM 3901 within a specific morphological and physiological framework typical of certain aquatic microorganisms. This adaptability in oxygen utilization and temperature suggests potential roles in biogeochemical cycles, especially in cold marine or brackish environments where organic matter decomposition may occur. The ability of this strain to thrive under both aerobic and anaerobic conditions may contribute to its ecological success in nutrient-rich habitats, enabling it to interact dynamically with other microbial communities. Thus, Formosa agariphila KMM 3901 exemplifies the versatility of certain microorganisms in adapting to fluctuating environmental conditions, which could have implications for understanding microbial dynamics in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFormosa
SpeciesFormosa agariphila
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Formosa agariphila KMM 3901 strain type strain: KMM 3901

Accession NumberNZ_HG315671.1

Gene Summary

Adenine Count

1394564 bp

Thymine Count

1403215 bp

Guanine Count

695407 bp

Cytosine Count

711668 bp

Genome Length

4228350 bp

Protein-coding Genes

3545 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
serine hydrolaseBN863_RS04895Not Available-1140429 - 114177250553.2
yeee/yede family proteinBN863_RS04900Not Available+1141966 - 114252020000.7
yeee/yede family proteinBN863_RS04905Not Available+1142525 - 114293815294.5
duf4870 domain-containing proteinBN863_RS04910Not Available+1142983 - 114334213351.0
histidine decarboxylaseBN863_RS04915Not Available-1143415 - 114454842528.6
lrp/asnc family transcriptional regulatorBN863_RS04920Not Available+1144702 - 114516017415.2
dna polymerase iii subunit betaBN863_RS04925Not Available-1145208 - 114632640981.9
gliding motility-associated abc transporter substrate-binding protein gldgBN863_RS04930Not Available-1146405 - 114807262642.2
hypothetical proteinBN863_RS04935Not Available-1148065 - 114855318807.5
gliding motility-associated abc transporter permease subunit gldfBN863_RS04940Not Available-1148556 - 114926926474.9

Displaying genes 1021 – 1030 of 3622 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da

Displaying 1–4 of 4 metabolites