Hymenobacter nivis strain NBRC 111535

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter nivis strain NBRC 111535 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics and is non-spore-forming. This strain thrives optimally at a temperature of 16.0°C, suggesting a preference for cooler environments, which may reflect its adaptation to specific ecological niches. The Gram-negative nature of H. nivis indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages in its environmental interactions, including resistance to certain antibiotics and the ability to engage in complex interactions with other microorganisms. As an aerobic organism, H. nivis requires oxygen for its growth and metabolic processes, which may limit its habitat to well-oxygenated environments. The unique combination of traits exhibited by Hymenobacter nivis strain NBRC 111535 suggests its potential role in biogeochemical cycling within its ecological niche, particularly in cooler, aerobic settings where organic matter decomposition occurs. This may contribute to soil health and nutrient availability in such environments, highlighting the ecological significance of this strain in maintaining ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter nivis
Strainstrain NBRC 111535

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter nivis strain NBRC 111535


Gene Summary

Adenine Count

943307 bp

Thymine Count

941308 bp

Guanine Count

1573217 bp

Cytosine Count

1569765 bp

Genome Length

5027597 bp

Protein-coding Genes

4514 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Dna recombination proteinDDQ68_RS00155Not Available+30952 - 3203739198.1
3'-5' exonucleaseDDQ68_RS00160Not Available+32030 - 3301035788.1
hypothetical proteinDDQ68_RS00165Not Available+33013 - 3401136149.0
1_nc_021804: replicative dna helicaseDDQ68_RS00170Not Available+34008 - 3550453864.0
hypothetical proteinDDQ68_RS00175Not Available+35525 - 356865983.36
Hnh endonucleaseDDQ68_RS23315Not Available+35838 - 3644923175.4
Ab1gp42DDQ68_RS00185Not Available+36506 - 367127740.41
Hypothetical proteinDDQ68_RS00190Not Available+36781 - 3775534542.7
1_nc_021800: virulence-associated protein e /helicase/ primaseDDQ68_RS00195Not Available+37805 - 3842822238.4
hypothetical proteinDDQ68_RS22280Not Available+38472 - 386486639.08

Displaying genes 1 – 10 of 4590 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites