Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Nocardiaceae
Genus
Rhodococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus ruber |
| Strain | strain YC-YT1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
838143 bp
Thymine Count
839814 bp
Guanine Count
1998922 bp
Cytosine Count
1992973 bp
Genome Length
5669852 bp
Protein-coding Genes
5139 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | YT1_RS01100 | Not Available | + | 8452 - 10485 | 74615.3 |
| atp-binding protein | YT1_RS01105 | Not Available | + | 10824 - 13883 | 107951.0 |
| roadblock/lc7 domain-containing protein | YT1_RS01110 | Not Available | + | 13880 - 14296 | 14183.0 |
| duf742 domain-containing protein | YT1_RS01115 | Not Available | + | 14310 - 14684 | 13319.0 |
| gtp-binding protein | YT1_RS01120 | Not Available | + | 14698 - 15252 | 19982.9 |
| mhyt domain-containing protein | YT1_RS01125 | Not Available | + | 15252 - 16088 | 29465.8 |
| mhyt domain-containing protein | YT1_RS01130 | Not Available | + | 16129 - 17061 | 33123.8 |
| intein-containing dna gyrase subunit a | YT1_RS01135 | Not Available | + | 17212 - 20997 | 139685.0 |
| duf3566 domain-containing protein | YT1_RS01140 | Not Available | + | 20998 - 22149 | 38278.2 |
| Trna-ile | Not Available | Not Available | + | 22225 - 22298 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

