Microbulbifer aggregans strain CCB-MM1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Microbulbiferaceae

Genus

Microbulbifer

Description

Microbulbifer aggregans strain CCB-MM1 is a Gram-negative, rod-shaped bacterium that exhibits aerobic respiration, thriving optimally at a temperature of 29.0°C. This strain is a member of the genus Microbulbifer, which is typically associated with marine environments and is known for its ability to degrade complex organic substrates. As a Gram-negative organism, M. aggregans CCB-MM1 possesses a thin peptidoglycan layer sandwiched between an inner and an outer membrane, which may contribute to its adaptability in various ecological niches, particularly in oxygen-rich environments. The rod shape of the bacterium may also play a role in its motility and interaction with substrates in marine ecosystems. The optimal growth temperature of 29.0°C suggests that this strain is well-suited for mesophilic conditions, potentially aligning with the typical thermal ranges found in coastal waters. The aerobic nature of M. aggregans strain CCB-MM1 indicates its reliance on oxygen for metabolic processes, which could influence its ecological interactions and the degradation of organic matter in its habitat. Overall, the traits of Microbulbifer aggregans strain CCB-MM1 highlight its potential role in nutrient cycling within marine environments, particularly in the breakdown of organic material, which is critical for maintaining ecosystem health and function. Further studies on its metabolic capabilities and ecological interactions could provide insights into its contributions to marine biogeochemistry.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer aggregans
Strainstrain CCB-MM1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbulbifer aggregans strain CCB-MM1


Gene Summary

Adenine Count

797756 bp

Thymine Count

792372 bp

Guanine Count

1137482 bp

Cytosine Count

1136716 bp

Genome Length

3864326 bp

Protein-coding Genes

3301 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
lps export abc transporter periplasmic protein lptcAUP74_RS00005Not Available+24 - 59021384.5
lipopolysaccharide transport periplasmic protein lptaAUP74_RS00010Not Available+577 - 112220129.6
lps export abc transporter atp-binding proteinAUP74_RS00015Not Available+1188 - 191326698.3
rna polymerase factor sigma-54AUP74_RS00020Not Available+2099 - 355353699.3
ribosome hibernation-promoting factor, hpf/yfia familyAUP74_RS00025Not Available+3749 - 403911009.2
pts iia-like nitrogen regulatory protein ptsnAUP74_RS00030Not Available+4043 - 450416354.5
rnase adapter rapzAUP74_RS00035Not Available+4598 - 545832424.9
hpr family phosphocarrier proteinAUP74_RS00040Not Available+5477 - 57469488.48
magnesium transporterAUP74_RS00045Not Available+5869 - 721249046.6
ribosome biogenesis factor yjgaAUP74_RS00050Not Available+7239 - 775120469.2

Displaying genes 1 – 10 of 3396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites