Sedimenticola thiotaurini strain SIP-G1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Sedimenticolaceae

Genus

Sedimenticola

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilySedimenticolaceae
GenusSedimenticola
SpeciesSedimenticola thiotaurini
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sedimenticola thiotaurini strain SIP-G1

Accession NumberNZ_CP011412.1

Gene Summary

Adenine Count

832622 bp

Thymine Count

831553 bp

Guanine Count

1130158 bp

Cytosine Count

1134611 bp

Genome Length

3928944 bp

Protein-coding Genes

3596 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
pepsy domain-containing proteinAAY24_RS00060Not Available-10660 - 1101012958.5
cbs domain-containing proteinAAY24_RS00065Not Available+11440 - 1189516630.6
uracil-dna glycosylase family proteinAAY24_RS00070O86222+12025 - 1261822450.1
riboflavin synthaseAAY24_RS00075P0AFU8-12619 - 1323922815.4
lysr substrate-binding domain-containing proteinAAY24_RS00080P16931-13285 - 1415731813.8
duf1127 domain-containing proteinAAY24_RS00085Not Available+14278 - 1454110069.3
pp2c family protein-serine/threonine phosphataseAAY24_RS00090P0AEV2+14830 - 1602044695.5
stas domain-containing proteinAAY24_RS00095Not Available+16020 - 1650517569.1
murein l,d-transpeptidase family proteinAAY24_RS00100Not Available+16620 - 1736628061.8
penicillin-binding protein 1bAAY24_RS00105Q9KUC0+17432 - 1982288627.5

Displaying genes 11 – 20 of 3693 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

192 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 192 metabolites