Rhodococcus opacus strain R7

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus opacus strain R7 is a Gram-positive bacterium characterized by its coccoid shape and filamentous cell arrangement. This strain is an obligate aerobe, requiring oxygen for its metabolic processes. R. opacus is known for its ability to degrade a variety of organic compounds, suggesting a potential role in bioremediation and environmental cleanup applications. The filamentous arrangement of R. opacus strain R7 may contribute to its adaptability in diverse ecological niches, allowing for enhanced surface area for nutrient absorption and potential interactions with other microorganisms. The presence of aerobic respiration mechanisms indicates that this strain can thrive in oxygen-rich environments, which may influence its ecological distribution and interactions within microbial communities. Furthermore, the ability of R. opacus to utilize various organic substrates as a carbon source highlights its metabolic versatility. This trait may enable the strain to colonize environments where organic pollution is prevalent, thus positioning it as a candidate for further research in biotechnological applications aimed at environmental remediation. The unique combination of its filamentous growth and aerobic lifestyle may also facilitate cooperative behaviors in microbial consortia, underscoring the ecological importance of R. opacus strain R7 in natural and engineered ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus opacus
Strainstrain R7

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus opacus strain R7
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

4653 bp

Thymine Count

4737 bp

Guanine Count

7854 bp

Cytosine Count

7931 bp

Genome Length

25175 bp

Protein-coding Genes

24 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenaseEP51_RS46195Not Available-56 - 86828496.1
nad(p)/fad-dependent oxidoreductaseEP51_RS46200Not Available-899 - 216144858.6
scp2 sterol-binding domain-containing proteinEP51_RS46205Not Available-2447 - 284214683.7
non-heme iron oxygenase ferredoxin subunitEP51_RS46210Not Available-2922 - 328713006.2
3-phenylpropionate/cinnamic acid dioxygenase subunit betaEP51_RS46215Not Available-3312 - 386021802.7
srpbcc family proteinEP51_RS46220Not Available-3883 - 520549857.5
aaa family atpaseEP51_RS46225Not Available+5648 - 10459175181.0
response regulator transcription factorEP51_RS46230Not Available+10456 - 1107622754.5
tyrosine-type recombinase/integraseEP51_RS46235Not Available-11210 - 114609220.87
tyrosine-type recombinase/integraseEP51_RS46240Not Available-11593 - 1258136909.4

Displaying genes 1 – 10 of 9254 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

58 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001767oxalateC2O4Chemical structure of oxalateNot available
Average88.019Da
Monoisotopic87.979658488Da
BASm0001772maleateC4H2O4Chemical structure of maleateNot available
Average114.057Da
Monoisotopic113.996405704Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 58 metabolites